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resolve centromere

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chhylp123
2021-05-06 07:59:51 -04:00
parent 24e5453781
commit 9ea4f6917f
5 changed files with 163 additions and 67 deletions
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hic.h
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@@ -74,5 +74,8 @@ void get_bub_id(bubble_type* bub, uint32_t root, uint64_t* id0, uint64_t* id1, u
void update_bubble_chain(ma_ug_t* ug, bubble_type* bub, uint32_t is_middle, uint32_t is_end);
void set_b_utg_weight_flag(bubble_type* bub, buf_t* b, uint32_t v, uint8_t* vis_flag, uint32_t flag, uint32_t* occ);
void debug_gfa_space(ma_ug_t* ug, hap_cov_t *cov);
void init_ug_idx(ma_ug_t *ug, uint64_t k, uint64_t up_bound, uint64_t low_bound, uint64_t build_idx);
void des_ug_idx();
uint64_t count_unique_k_mers(char *r, uint64_t len, uint64_t query, uint64_t target, uint64_t *all, uint64_t *found);
#endif