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new ul

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This commit is contained in:
chhylp123
2021-12-11 14:55:36 -05:00
parent b640289b19
commit 9ec286e64e
9 changed files with 470 additions and 27 deletions
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Process_Read.h
+41
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@@ -156,6 +156,41 @@ typedef struct
pthread_mutex_t OutputMutex;
} Debug_reads;
typedef struct
{
uint32_t hid:31, rev:1;
uint32_t qs, qe, ts, te;
} uc_block_t;
typedef struct
{
uint32_t *a;
ssize_t n ,m;
} N_t;
typedef struct
{
char *n_n;
uint32_t n_l;
kvec_t(uint8_t) r_base;
uint32_t rlen;
kvec_t(uc_block_t) bb;
N_t N_site;
} ul_vec_t;
typedef struct
{
ul_vec_t *a;
size_t n, m;
All_reads *hR;
uint32_t mm;
} all_ul_t;
extern all_ul_t UL_INF;
void init_All_reads(All_reads* r);
void malloc_All_reads(All_reads* r);
void ha_insert_read_len(All_reads *r, int read_len, int name_len);
@@ -173,4 +208,10 @@ int destory_read_bin(All_reads* r);
void init_Debug_reads(Debug_reads* x, const char* file);
void destory_Debug_reads(Debug_reads* x);
void recover_UC_sub_Read(UC_Read* i_r, long long start_pos, long long length, uint8_t strand, All_reads* R_INF, long long ID);
void init_all_ul_t(all_ul_t *x, All_reads *hR);
void destory_all_ul_t(all_ul_t *x, All_reads *hR);
void append_ul_t(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str, int64_t str_l, ul_ov_t *o, int64_t on);
void retrieve_ul_t(UC_Read* r, all_ul_t *ref, uint64_t ID, uint8_t strand);
#endif