From a1e32ee2a2dee9b6bf23ca1cbfb7710174f6163b Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Thu, 26 Dec 2019 15:43:58 -0500 Subject: [PATCH] README --- README.md | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 2ffa7c9..f2e7a4f 100644 --- a/README.md +++ b/README.md @@ -13,9 +13,10 @@ Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hif Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets: -|Dataset |GSize |Cov |Asm options |CPU time |Wall time | RAM| -|:-----------------------|-----:|-------:|:---------------------|--------:|---------:|-------:| -|[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m| ?114.1G| -|[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m| ?122.1G| -|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| -|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16.7G| +|Dataset |GSize | Cov | Asm options |CPU time|Wall time| RAM|unitig/contig N50| +|:---------------|-----:|-------:|:---------------------|-------:|--------:|------:|----------------:| +|[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m|?114.1G| 93.5Kb/18.6Mb| +|[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m|?122.1G| 320kb/29Mb| +|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| NA/39.8Mb| +|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16.7G| NA/7.5Mb| +