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smaller memory requirement

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chhylp123
2022-05-12 16:15:58 -04:00
parent dd8888aa90
commit a2198891e7
8 changed files with 1345 additions and 2581 deletions
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POA.h
+1 -1
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@@ -431,7 +431,7 @@ uint64_t* get_Topo_Sort_Order(Node_alloc* list, int need_sort);
void init_Graph(Graph* g);
void addUnmatchedSeqToGraph(Graph* g, char* g_read_seq, long long g_read_length, long long* startID, long long* endID);
void addmatchedSeqToGraph(Graph* backbone, long long currentNodeID, char* x_string, long long x_length,
char* y_string, long long y_length, CIGAR* cigar, long long backbone_start, long long backbone_end);
char* y_string, long long y_length, window_list *cigar_idx, window_list_alloc *cigar_s, long long backbone_start, long long backbone_end);
void destory_Graph(Graph* g);
void clear_Graph(Graph* g);
void Perform_POA(Graph* g, overlap_region_alloc* overlap_list, All_reads* R_INF, UC_Read* g_read);