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update k-mer peaks

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chhylp123
2020-07-07 13:20:25 -04:00
parent 2e56ef7db5
commit a25c37ed89
9 changed files with 106 additions and 28 deletions
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htab.cpp
+2 -1
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@@ -796,7 +796,7 @@ void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs, int *hom_cov)
return (void*)flt_tab;
}
ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs, int *hom_cov)
ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs, int *hom_cov, int *het_cov)
{
int64_t cnt[YAK_N_COUNTS], tot_cnt;
int peak_hom, peak_het, i, extra_flag1, extra_flag2;
@@ -818,6 +818,7 @@ ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_f
fprintf(stderr, "[M::%s] count[%d] = %ld (for sanity check)\n", __func__, YAK_MAX_COUNT, (long)cnt[YAK_MAX_COUNT]);
peak_hom = ha_analyze_count(YAK_N_COUNTS, cnt, &peak_het);
if (hom_cov) *hom_cov = peak_hom;
if (het_cov) *het_cov = peak_het;
if (peak_hom > 0) fprintf(stderr, "[M::%s] peak_hom: %d; peak_het: %d\n", __func__, peak_hom, peak_het);
if (flt_tab == 0) {
int cutoff = (int)(peak_hom * asm_opt->high_factor);