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cal_exz_infi

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chhylp123
2022-09-24 16:16:54 -04:00
parent 38e00d2086
commit a297105258
3 changed files with 246 additions and 48 deletions
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Levenshtein_distance.h
+9 -1
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@@ -537,6 +537,9 @@ inline uint32_t pop_trace(asg16_v *res, uint32_t i, uint16_t *c, uint32_t *len)
return i;
}
///511 -> 16 64-bits
#define MAX_E 511
#define MAX_L 2500
typedef uint64_t w_sig;
#define bitw (6)
@@ -3354,7 +3357,9 @@ inline void ed_band_cal_extension_64_0_w_trace(char *pstr, int32_t pn, char *tst
c = seq_nt4_table[(uint8_t)pstr[i_bd]];
if(c < 4) Peq[c] |= mm;
}
// if(((ez->path.n+5)>(ez->nword*tn*5))||((ez->path.n+5)>(ez->path.m))) {
// fprintf(stderr, "[M::%s::] pn::%d, tn::%d\n", __func__, pn, tn);
// }
ez->path.a[ez->path.n++] = D0;//diff
ez->path.a[ez->path.n++] = VP;//diff
ez->path.a[ez->path.n++] = VN;//diff
@@ -3365,6 +3370,9 @@ inline void ed_band_cal_extension_64_0_w_trace(char *pstr, int32_t pn, char *tst
if (!(D0&(1ULL))) {
++err; if (err>cut) return;
}
// if(((ez->path.n+5)>(ez->nword*tn*5))||((ez->path.n+5)>(ez->path.m))) {
// fprintf(stderr, "[M::%s::] pn::%d, tn::%d\n", __func__, pn, tn);
// }
ez->path.a[ez->path.n++] = D0;//diff
ez->path.a[ez->path.n++] = VP;//diff
ez->path.a[ez->path.n++] = VN;//diff