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haplotype popping

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chhylp123
2021-05-24 19:43:50 -04:00
parent 9e6dde7fb2
commit a39f01f4d8
9 changed files with 1696 additions and 567 deletions
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Makefile
+3 -1
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@@ -6,7 +6,8 @@ CPPFLAGS=
INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o horder.o
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o horder.o \
tovlp.o
EXE= hifiasm
LIBS= -lz -lpthread -lm
@@ -74,3 +75,4 @@ sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
hic.o: hic.h
rcut.o: rcut.h
horder.o: horder.h
tovlp.o: tovlp.h