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haplotype popping

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chhylp123
2021-05-24 19:43:50 -04:00
parent 9e6dde7fb2
commit a39f01f4d8
9 changed files with 1696 additions and 567 deletions
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hic.h
+3 -2
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@@ -101,7 +101,8 @@ void des_ug_idx();
uint64_t count_unique_k_mers(char *r, uint64_t len, uint64_t query, uint64_t target, uint64_t *all, uint64_t *found);
void init_pdq(pdq* q, uint64_t utg_num);
void destory_pdq(pdq* q);
uint32_t check_trans_relation_by_path(uint32_t v, uint32_t w, pdq* pqv, pdq* pqw,
asg_t *sg, uint8_t *dest, uint8_t df, uint32_t df_occ, uint32_t* pre, double rate);
uint32_t check_trans_relation_by_path(uint32_t v, uint32_t w, pdq* pqv, uint32_t* path_v, buf_t *resv,
pdq* pqw, uint32_t* path_w, buf_t *resw, asg_t *sg, uint8_t *dest, uint8_t df, uint32_t df_occ, double rate,
long long *dis);
#endif