xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

cleaner assembly graph

Browse Source
This commit is contained in:
chhylp123
2022-12-06 09:52:00 -05:00
parent 786f8bdff0
commit a3b72457f0
8 changed files with 426 additions and 38 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
CommandLines.cpp
View File

@@ -172,8 +172,10 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->k_mer_length = 51;
asm_opt->hic_mer_length = 31;
asm_opt->ul_mer_length = 19;
asm_opt->trans_mer_length = 31;
asm_opt->mz_win = 51;
asm_opt->ul_mz_win = 19;
asm_opt->trans_win = 31;
asm_opt->mz_rewin = 1000;
asm_opt->ul_mz_rewin = 360;
asm_opt->mz_sample_dist = 500;
@@ -208,6 +210,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->purge_level_trio = 0;
asm_opt->purge_simi_rate_l2 = 0.75;
asm_opt->purge_simi_rate_l3 = 0.55;
asm_opt->trans_base_rate = 0.8;
asm_opt->purge_overlap_len = 1;
///asm_opt->purge_overlap_len_hic = 50;
asm_opt->recover_atg_cov_min = -1024;