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topo phasing

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chhylp123
2021-04-22 22:38:52 -04:00
parent 278efaa876
commit a5b29b00bd
3 changed files with 861 additions and 117 deletions
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rcut.h
+3 -2
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@@ -15,7 +15,7 @@ typedef struct {
}mc_interval_t;
#define mc_node_t int8_t
// #define w_t int32_t
// #define w_t int64_t
// #define t_w_t int64_t
// #define w_cast(x) ((t_w_t)((x) < 0 ? (x) - 0.5 : (x) + 0.5))
@@ -87,5 +87,6 @@ static inline double kr_drand_r(uint64_t *x)
u.i = 0x3FFULL << 52 | (*x) >> 12;
return u.d - 1.0;
}
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub, mb_nodes_t* u);
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub, kv_u_trans_t *ref);
#endif