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fixed het/hom node bugs

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chhylp123
2022-12-08 03:07:14 -05:00
parent a3b72457f0
commit a674110b23
6 changed files with 67 additions and 21 deletions
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gfa_ut.h
+2 -1
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@@ -6,6 +6,7 @@
typedef struct {
asg_t *g;
ma_hit_t_alloc *src;
ma_sub_t *cov;
R_to_U* ruIndex;
int64_t max_hang;
int64_t min_ovlp;
@@ -25,7 +26,7 @@ void asg_arc_cut_complex_bub_links(asg_t *g, asg64_v *in, float len_rat, float o
uint32_t asg_cut_large_indel(asg_t *g, asg64_v *in, int32_t max_ext, float ou_rat, uint32_t is_ou);
uint32_t asg_cut_semi_circ(asg_t *g, uint32_t lim_len, uint32_t is_clean);
void ul_realignment_gfa(ug_opt_t *uopt, asg_t *sg, int64_t clean_round, double min_ovlp_drop_ratio,
double max_ovlp_drop_ratio, int64_t max_tip, bub_label_t *b_mask_t, uint32_t is_trio, char *o_file, ul_renew_t *ropt);
double max_ovlp_drop_ratio, int64_t max_tip, int64_t max_ul_tip, bub_label_t *b_mask_t, uint32_t is_trio, char *o_file, ul_renew_t *ropt);
void recover_contain_g(asg_t *g, ma_hit_t_alloc *src, R_to_U* ruIndex, int64_t max_hang, int64_t min_ovlp, int64_t ul_occ);
void normalize_gou(asg_t *g);
void prt_specfic_sge(asg_t *g, uint32_t src, uint32_t dst, const char* cmd);