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fix gap alignment extention

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chhylp123
2022-06-23 22:11:28 -04:00
parent 3934167770
commit a82e05c9f2
5 changed files with 703 additions and 98 deletions
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4
inter.h
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@@ -11,5 +11,9 @@ ma_ug_t *ul_realignment(const ug_opt_t *uopt, asg_t *sg);
int32_t write_all_ul_t(all_ul_t *x, char* file_name, ma_ug_t *ug);
int32_t load_all_ul_t(all_ul_t *x, char* file_name, All_reads *hR, ma_ug_t *ug);
uint32_t ugl_cover_check(uint64_t is, uint64_t ie, ma_utg_t *u);
void filter_ul_ug(ma_ug_t *ug);
void gen_ul_vec_rid_t(all_ul_t *x, All_reads *rdb, ma_ug_t *ug);
void update_ug_arch_ul_mul(ma_ug_t *ug);
void print_ul_alignment(ma_ug_t *ug, all_ul_t *aln, uint32_t id, const char* cmd);
#endif