From a8df77962d62df50f5f48cbf470471d3bf1d9ab6 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Thu, 26 Dec 2019 15:49:32 -0500 Subject: [PATCH] README --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index c1b4389..e2e20ae 100644 --- a/README.md +++ b/README.md @@ -13,10 +13,10 @@ Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hif Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets: -|Dataset |GSize | Cov | Asm options |CPU time|Wall time| RAM|unitig/contig N501| +|Dataset |GSize | Cov | Asm options |CPU time|Wall time| RAM|unitig/contig N50[1]| |:---------------|-----:|-----:|:---------------------|-------:|--------:|----:|----------------:| |[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m|?114G| 93.5Kb/18.6Mb| |[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m|?122G| 320kb/29Mb| -|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| NA/39.8Mb| -|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16G| NA/7.5Mb| +|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| NA[2]/39.8Mb| +|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16G| NA[3]/7.5Mb|