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backup phasing

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chhylp123
2021-05-31 04:19:05 -04:00
parent e774a83be2
commit aa164949f2
5 changed files with 71 additions and 55 deletions
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hic.cpp
+6 -8
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@@ -785,9 +785,7 @@ ha_ug_index* build_unitig_index(ma_ug_t *ug, int k, uint64_t up_occ, uint64_t lo
ha_ug_index* idx = NULL; CALLOC(idx, 1);
pldat_t pl; pl.h = idx; pl.is_cnt = 1;
double index_time = yak_realtime(), beg_time;
fprintf(stderr, "sa-0\n");
init_ha_ug_index_opt(idx, ug, k, &pl, up_occ, low_occ, thread_num);
fprintf(stderr, "sa-1\n");
beg_time = yak_realtime();
pl.is_cnt = 1;
@@ -15733,7 +15731,7 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx, ug_o
skip_flipping:
verbose_het_stat(&bub);
print_kv_weight(&k_trans);
// print_kv_weight(&k_trans);
// horder_t *ho = init_horder_t(&sl.hits, idx->uID_bits, idx->pos_mode, idx->read_g, idx->ug, &bub, &(idx->t_ch->k_trans), opt, 3);
@@ -15865,11 +15863,11 @@ int hic_short_align_poy(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx,
resolve_tangles_hic(idx, &bub, &sl.hits, &k_trans);
measure_distance(idx, idx->ug, &sl.hits, &link, &bub, &(idx->t_ch->k_trans));
// if((asm_opt.flag & HA_F_VERBOSE_GFA) && load_psg_t(&s, asm_opt.output_file_name))
// {
// bub.round_id = bub.n_round;
// goto skip_flipping;
// }
if((asm_opt.flag & HA_F_VERBOSE_GFA) && load_psg_t(&s, asm_opt.output_file_name))
{
bub.round_id = bub.n_round;
goto skip_flipping;
}
s = init_psg_t(11, idx->ug, idx->read_g, opt);
for (bub.round_id = 0; bub.round_id < bub.n_round; bub.round_id++)
{