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mempcpy -> memcpy

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chhylp123
2021-09-12 17:43:43 -04:00
parent 5e84db0ec9
commit ab80851b94
9 changed files with 424 additions and 135 deletions
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23
htab.cpp
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@@ -504,7 +504,13 @@ void ha_pt_destroy(ha_pt_t *h)
if (h == 0) return;
for (i = 0; i < 1<<h->pre; ++i) {
yak_pt_destroy(h->h[i].h);
free(h->h[i].a);
if(h->h[i].a){
free(h->h[i].a); h->h[i].a = NULL;
}
if(h->h[i].al){
free(h->h[i].al); h->h[i].al = NULL;
}
}
free(h->h); free(h);
}
@@ -520,6 +526,17 @@ const ha_idxpos_t *ha_pt_get(const ha_pt_t *h, uint64_t hash, int *n)
return &g->a[kh_val(g->h, k)];
}
const ha_idxposl_t *ha_ptl_get(const ha_pt_t *h, uint64_t hash, int *n)
{
khint_t k;
const ha_pt1_t *g = &h->h[hash & ((1ULL<<h->pre) - 1)];
*n = 0;
k = yak_pt_get(g->h, hash >> h->pre << YAK_COUNTER_BITS);
if (k == kh_end(g->h)) return 0;
*n = kh_key(g->h, k) & YAK_MAX_COUNT;
return &g->al[kh_val(g->h, k)];
}
const int ha_pt_cnt(const ha_pt_t *h, uint64_t hash)
{
khint_t k;
@@ -703,7 +720,7 @@ static void *sf##_worker_count(void *data, int step, void *in) /** callback for
break;\
}\
} else if(p->us_in) {\
ma_utg_t *u; s->uq = p->us_in->h;\
ma_utg_t *u; s->uq = 1;\
while (p->n_seq < p->us_in->n) {\
u = &(p->us_in->a[p->n_seq]);\
if (s->n_seq == s->m_seq) {\
@@ -1052,7 +1069,7 @@ void *ha_ft_ug_gen(const hifiasm_opt_t *asm_opt, ma_utg_v *us, int is_HPC, int k
///HAF_COUNT_EXACT ---> no bf; HAF_COUNT_ALL ---> no minimizer
h = ha_count(asm_opt, HAF_COUNT_ALL|HAF_UG_READ|HAF_COUNT_EXACT, is_HPC, k, w, NULL, NULL, NULL, us, 0, NULL);
ha_ct_shrink(h, min_freq, max_freq>YAK_MAX_COUNT-1?YAK_MAX_COUNT-1:max_freq, asm_opt->thread_num);
flt_tab = gen_hh(h, asm_opt->max_kmer_cnt);
flt_tab = gen_hh(h, YAK_MAX_COUNT);
ha_ct_destroy(h);
return (void*)flt_tab;
}