From 44475e26650d1c38b0554e6bf7ae0e293b13df00 Mon Sep 17 00:00:00 2001 From: chhylp123 Date: Fri, 12 May 2023 20:57:11 -0400 Subject: [PATCH] remove ksw2 from makefile --- CommandLines.h | 2 +- Makefile | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/CommandLines.h b/CommandLines.h index 9db2f40..51e5a6b 100644 --- a/CommandLines.h +++ b/CommandLines.h @@ -5,7 +5,7 @@ #include #include -#define HA_VERSION "0.19.5-r589" +#define HA_VERSION "0.19.5-r590" #define VERBOSE 0 diff --git a/Makefile b/Makefile index 9d70e79..875d4ba 100644 --- a/Makefile +++ b/Makefile @@ -6,7 +6,7 @@ CPPFLAGS= INCLUDES= OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \ POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \ - htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o horder.o \ + htab.o hist.o sketch.o anchor.o extract.o sys.o hic.o rcut.o horder.o \ tovlp.o inter.o kalloc.o gfa_ut.o gchain_map.o EXE= hifiasm LIBS= -lz -lpthread -lm @@ -44,7 +44,7 @@ Assembly.o: kthread.h CommandLines.o: CommandLines.h ketopt.h Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h -Correct.o: ksw2.h ksort.h +Correct.o: ksort.h Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h Hash_Table.o: CommandLines.h ksort.h Levenshtein_distance.o: Levenshtein_distance.h