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for high-het and coverage

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chhylp123
2020-07-28 13:07:35 -04:00
parent 94008c02ac
commit ace34ae2b8
12 changed files with 1902 additions and 89 deletions
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CommandLines.h
+2 -1
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@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.9-r289"
#define HA_VERSION "0.9-r296"
#define VERBOSE 0
@@ -17,6 +17,7 @@
#define HA_F_PURGE_JOIN 0x80
#define HA_F_BAN_POST_JOIN 0x100
#define HA_F_BAN_ASSEMBLY 0x200
#define HA_F_HIGH_HET 0x400
#define HA_MIN_OV_DIFF 0.02 // min sequence divergence in an overlap