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chhylp123
2020-07-28 13:07:35 -04:00
parent 94008c02ac
commit ace34ae2b8
12 changed files with 1902 additions and 89 deletions
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Makefile
+3 -2
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@@ -4,7 +4,7 @@ CPPFLAGS=
INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
htab.o hist.o sketch.o anchor.o extract.o sys.o
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o
EXE= hifiasm
LIBS= -lz -lpthread -lm
@@ -36,7 +36,7 @@ Assembly.o: Assembly.h CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h
Assembly.o: Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h
Assembly.o: kthread.h
CommandLines.o: CommandLines.h ketopt.h
Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h
Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h ksw2.h
Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h
Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
Hash_Table.o: CommandLines.h ksort.h
@@ -65,3 +65,4 @@ main.o: CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h Assembly.h
main.o: Levenshtein_distance.h htab.h
sketch.o: kvec.h htab.h Process_Read.h Overlaps.h kdq.h CommandLines.h
sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
ksw2_extz2_sse.o: ksw2.h