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Merge branch 'flt-p' into dev-lh3

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Heng Li
2020-04-10 14:03:44 -04:00
parent 22b2e1e9e1 943b6947cb
commit ad1b79a6bb
3 changed files with 1120 additions and 32 deletions
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Overlaps.cpp
+2 -2
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@@ -22279,7 +22279,7 @@ kvec_asg_arc_t_warp* new_rtg_edges)
enable_debug_mode(1);
///enable_debug_mode(1);
purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang,
min_ovlp, bubble_dist, drop_ratio, 0);
@@ -22301,7 +22301,7 @@ kvec_asg_arc_t_warp* new_rtg_edges)
///debug_purge_dup = 1;
///deduplicate_advance(*ug, read_g, coverage_cut, sources, reverse_sources, 20, 100, 0.05, 0.2, ruIndex, 0);
///delete_useless_nodes(ug);
enable_debug_mode(0);
///enable_debug_mode(0);
purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang,
min_ovlp, bubble_dist, drop_ratio, 0);
delete_useless_nodes(ug);