xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-09 14:10:55 +08:00
Code Issues Packages Projects Releases Wiki Activity

Merge branch 'flt-p' into dev-lh3

Browse Source
This commit is contained in:
Heng Li
2020-04-10 14:03:44 -04:00
parent 22b2e1e9e1 943b6947cb
commit ad1b79a6bb
3 changed files with 1120 additions and 32 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
+2 -2
View File
@@ -22279,7 +22279,7 @@ kvec_asg_arc_t_warp* new_rtg_edges)
enable_debug_mode(1); ///enable_debug_mode(1);
purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang, purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang,
min_ovlp, bubble_dist, drop_ratio, 0); min_ovlp, bubble_dist, drop_ratio, 0);
@@ -22301,7 +22301,7 @@ kvec_asg_arc_t_warp* new_rtg_edges)
///debug_purge_dup = 1; ///debug_purge_dup = 1;
///deduplicate_advance(*ug, read_g, coverage_cut, sources, reverse_sources, 20, 100, 0.05, 0.2, ruIndex, 0); ///deduplicate_advance(*ug, read_g, coverage_cut, sources, reverse_sources, 20, 100, 0.05, 0.2, ruIndex, 0);
///delete_useless_nodes(ug); ///delete_useless_nodes(ug);
enable_debug_mode(0); ///enable_debug_mode(0);
purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang, purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang,
min_ovlp, bubble_dist, drop_ratio, 0); min_ovlp, bubble_dist, drop_ratio, 0);
delete_useless_nodes(ug); delete_useless_nodes(ug);
Overlaps.h
+10
View File
@@ -365,11 +365,21 @@ typedef struct {
uint32_t pre_n_seq, seqID; uint32_t pre_n_seq, seqID;
} C_graph; } C_graph;
typedef struct {
kvec_t(uint8_t) a;
uint32_t i;
} kvec_t_u8_warp;
typedef struct { typedef struct {
kvec_t(uint32_t) a; kvec_t(uint32_t) a;
uint32_t i; uint32_t i;
} kvec_t_u32_warp; } kvec_t_u32_warp;
typedef struct {
kvec_t(int32_t) a;
uint32_t i;
} kvec_t_i32_warp;
typedef struct { typedef struct {
kvec_t(uint64_t) a; kvec_t(uint64_t) a;
uint64_t i; uint64_t i;
Purge_Dups.cpp
+1108 -30
View File
File diff suppressed because it is too large Load Diff