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full error correction

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This commit is contained in:
Haoyu Cheng
2019-07-14 21:13:50 -04:00
parent f508762557
commit ad8a4c9c65
10 changed files with 1451 additions and 13 deletions
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Correct.h
+9 -1
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@@ -3,7 +3,10 @@
#include <stdint.h>
#include "Hash_Table.h"
#include "Levenshtein_distance.h"
#include "POA.h"
#define CORRECT_THRESHOLD 0.6
#define MIN_COVERAGE_THRESHOLD 4
@@ -14,6 +17,11 @@
typedef struct
{
char* corrected_read;
long long corrected_read_length;
long long corrected_read_size;
long long corrected_base;
uint64_t* overlapID;
uint64_t length;
uint64_t lengthNT;
@@ -29,7 +37,7 @@ typedef struct
void correct_overlap(overlap_region_alloc* overlap_list, All_reads* R_INF,
UC_Read* g_read, Correct_dumy* dumy, UC_Read* overlap_read,
UC_Read* g_read, Correct_dumy* dumy, UC_Read* overlap_read, Graph* g,
long long* matched_overlap_0, long long* matched_overlap_1,
long long* potiental_matched_overlap_0, long long* potiental_matched_overlap_1);
void init_Correct_dumy(Correct_dumy* list);