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r201: automatically adjust -N

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Heng Li
2020-04-05 22:43:01 -04:00
parent 3773610532
commit adbc65feda
5 changed files with 43 additions and 33 deletions
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htab.h
+2 -2
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@@ -26,11 +26,11 @@ extern const unsigned char seq_nt4_table[256];
extern void *ha_flt_tab;
extern ha_pt_t *ha_idx;
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs);
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs, int *hom_cov);
int ha_ft_isflt(const void *hh, uint64_t y);
void ha_ft_destroy(void *h);
ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs);
ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs, int *hom_cov);
void ha_pt_destroy(ha_pt_t *h);
const ha_idxpos_t *ha_pt_get(const ha_pt_t *h, uint64_t hash, int *n);