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trio-dual/bug for hic phasing

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chhylp123
2023-05-31 14:54:50 -04:00
parent 44475e2665
commit adeb2c603d
7 changed files with 259 additions and 6 deletions
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hic.h
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@@ -117,5 +117,6 @@ void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt,
spg_t *hic_pre_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt, kvec_pe_hit **rhits);
void prt_bubble_gfa_adv(FILE *fp, bubble_type *bub, const char* utg_pre, const char* bub_pre, const char* chain_pre);
void bp_solve(ug_opt_t *opt, kv_u_trans_t *ref, ma_ug_t *ug, asg_t *sg, bubble_type *bub, double cis_rate);
void trio_phasing_refine(ma_ug_t *ug, asg_t* sg, kv_u_trans_t *ta, ug_opt_t *opt);
#endif