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disable integer correction; disable contain dedup

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chhylp123
2023-03-10 09:12:07 -05:00
parent 85c643e85d
commit af4be8ca1a
7 changed files with 1073 additions and 57 deletions
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3
CommandLines.cpp
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@@ -56,6 +56,7 @@ static ko_longopt_t long_options[] = {
{ "bin-only", ko_no_argument, 341},
{ "ul-round", ko_required_argument, 342},
{ "prt-raw", ko_no_argument, 343},
{ "integer-correct", ko_required_argument, 344},
{ 0, 0, 0 }
};
@@ -267,6 +268,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->bin_only = 0;
asm_opt->ul_clean_round = 1;
asm_opt->prt_dbg_gfa = 0;
asm_opt->integer_correct_round = 0;
}
void destory_enzyme(enzyme* f)
@@ -801,6 +803,7 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
else if (c == 341) asm_opt->bin_only = 1;
else if (c == 342) asm_opt->ul_clean_round = atol(opt.arg);
else if (c == 343) asm_opt->prt_dbg_gfa = 1;
else if (c == 344) asm_opt->integer_correct_round = atol(opt.arg);
else if (c == 'l') { ///0: disable purge_dup; 1: purge containment; 2: purge overlap
asm_opt->purge_level_primary = asm_opt->purge_level_trio = atoi(opt.arg);
}