xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-27 11:38:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

disable integer correction; disable contain dedup

Browse Source
This commit is contained in:
chhylp123
2023-03-10 09:12:07 -05:00
parent 85c643e85d
commit af4be8ca1a
7 changed files with 1073 additions and 57 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
+6 -1
View File
@@ -33683,10 +33683,15 @@ ma_hit_t_alloc* src, uint64_t* readLen, R_to_U* ruIndex, bub_label_t *b_mask_t,
sg = ma_sg_gen_ul(src, n_read, *cov, ruIndex, max_hang_length, mini_overlap_length, UL_COV_THRES);
if(asm_opt.prt_dbg_gfa) prt_dbg_gfa(sg, "raw", *cov, src, ruIndex, max_hang_length, mini_overlap_length);
gen_ug_opt_t(&uopt, src, NULL, max_hang_length, mini_overlap_length, gap_fuzz, min_dp, readLen, *cov, ruIndex, -1, -1, -1, -1, -1, b_mask_t);
///debug
// asg_symm(sg);
// dedup_contain_g(&uopt, sg);
if(clean_contain_g(&uopt, sg, 0)) update_sg_uo(sg, src);
// prt_specfic_sge(sg, 10498, 10505, "--*--");
asg_arc_del_trans_ul(sg, gap_fuzz);
// prt_specfic_sge(sg, 10498, 10505, "--#--");
// prt_specfic_sge(sg, 10498, 10505, "--#--");
}
init_bub_label_t(b_mask_t, MIN(10, asm_opt.thread_num), sg->n_seq);