From b01614fd71d780eb52ca93b5128b9292271dd076 Mon Sep 17 00:00:00 2001 From: chhylp123 Date: Sun, 13 Oct 2024 19:07:51 -0400 Subject: [PATCH] update README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 3b56db4..75a556d 100644 --- a/README.md +++ b/README.md @@ -23,10 +23,10 @@ yak count -b37 -t16 -o pat.yak <(cat pat_1.fq.gz pat_2.fq.gz) <(cat pat_1.fq.gz yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz) hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz -# Improve contiguity for diploid genome assembly by self-scaffolding +# Improve contiguity for diploid genome assembly by self-scaffolding (`--dual-scaf`) hifiasm -o HG002.asm --dual-scaf --h1 read1.fq.gz --h2 read2.fq.gz HG002-HiFi.fq.gz -# Preserve more telomeres for human genomes +# Preserve more telomeres for human genomes (`--telo-m CCCTAA`) hifiasm -o HG002.asm --telo-m CCCTAA --h1 read1.fq.gz --h2 read2.fq.gz HG002-HiFi.fq.gz # Hybrid assembly with HiFi, ultralong and Hi-C reads