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new somatic variant popping

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chhylp123
2021-05-19 09:52:40 -04:00
parent be8e1e3117
commit b12e008416
5 changed files with 562 additions and 84 deletions
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hic.cpp
+2 -2
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@@ -15536,7 +15536,7 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx, ug_o
skip_flipping:
verbose_het_stat(&bub);
horder_t *ho = init_horder_t(&sl.hits, idx->uID_bits, idx->pos_mode, idx->read_g, idx->ug, &bub, opt, 3);
// horder_t *ho = init_horder_t(&sl.hits, idx->uID_bits, idx->pos_mode, idx->read_g, idx->ug, &bub, &(idx->t_ch->k_trans), opt, 3);
///print_hc_links(&link, 0, &hap);
// print_kv_u_trans(&k_trans, &link, s->s);
@@ -15549,7 +15549,7 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx, ug_o
///print_debug_bubble_graph(&bub, idx->ug, asm_opt.output_file_name);
// print_bubble_chain(&bub);
// destory_contig_partition(&hap);
destory_horder_t(&ho);
// destory_horder_t(&ho);
kv_destroy(back_hc_edge.a);
kv_destroy(sl.hits.a);
kv_destroy(sl.hits.idx);