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seperate purgeing and hom peak

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chhylp123
2021-07-25 11:23:06 -04:00
parent 6a043540b5
commit b14f894160
6 changed files with 87 additions and 22 deletions
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Overlaps.cpp
+4 -2
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@@ -16995,7 +16995,8 @@ kvec_asg_arc_t_warp* new_rtg_edges, bub_label_t* b_mask_t)
if(asm_opt.recover_atg_cov_min == -1024)
{
asm_opt.recover_atg_cov_max = asm_opt.hom_global_coverage/HOM_PEAK_RATE;
asm_opt.recover_atg_cov_max = (asm_opt.hom_global_coverage_set?
(asm_opt.hom_global_coverage):(((double)asm_opt.hom_global_coverage)/((double)HOM_PEAK_RATE)));
asm_opt.recover_atg_cov_min = asm_opt.recover_atg_cov_max * 0.85;
asm_opt.recover_atg_cov_max = INT32_MAX;
}
@@ -24806,7 +24807,8 @@ uint32_t collect_p_trans, uint32_t collect_p_trans_f)
if(asm_opt.recover_atg_cov_min == -1024)
{
asm_opt.recover_atg_cov_max = asm_opt.hom_global_coverage/HOM_PEAK_RATE;
asm_opt.recover_atg_cov_max = (asm_opt.hom_global_coverage_set?
(asm_opt.hom_global_coverage):(((double)asm_opt.hom_global_coverage)/((double)HOM_PEAK_RATE)));
asm_opt.recover_atg_cov_min = asm_opt.recover_atg_cov_max * 0.85;
asm_opt.recover_atg_cov_max = INT32_MAX;
}