From b245e9a760174b3392047864264705d022643e27 Mon Sep 17 00:00:00 2001 From: chhylp123 Date: Sun, 12 Apr 2020 17:46:20 -0400 Subject: [PATCH] fix warning --- Overlaps.cpp | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Overlaps.cpp b/Overlaps.cpp index 4eae1f2..9672eee 100644 --- a/Overlaps.cpp +++ b/Overlaps.cpp @@ -13467,11 +13467,6 @@ kvec_asg_arc_t_warp* new_rtg_edges) delete_useless_nodes(ug); - // purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang, - // min_ovlp, bubble_dist, drop_ratio, 1); - // deduplicate(*ug, read_g, reverse_sources, 20, 100, 0.05, 0.2, ruIndex, 1); - // delete_useless_nodes(ug); - update_unitig_graph((*ug), read_g, reverse_sources, ruIndex, flag, drop_rate); renew_utg(ug, read_g, new_rtg_edges); @@ -22277,19 +22272,13 @@ kvec_asg_arc_t_warp* new_rtg_edges) renew_utg(ug, read_g, new_rtg_edges); - - - ///enable_debug_mode(1); - purge_dups(*ug, read_g, coverage_cut, reverse_sources, ruIndex, new_rtg_edges, 0.75, 50, 50, 0.5, max_hang, min_ovlp, bubble_dist, drop_ratio, 0); delete_useless_nodes(ug); renew_utg(ug, read_g, new_rtg_edges); - - rescue_missing_overlaps_aggressive(*ug, read_g, sources, coverage_cut, ruIndex, max_hang, min_ovlp, 0, 0, 1, NULL); renew_utg(ug, read_g, new_rtg_edges);