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rerelease v0.13

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chhylp123
2020-10-22 14:24:59 -04:00
parent de4163e881
commit b2b4624cea
4 changed files with 8 additions and 6 deletions
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6
CommandLines.cpp
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@@ -24,7 +24,7 @@ static ko_longopt_t long_options[] = {
{ "purge-cov", ko_required_argument, 309 },
{ "pri-range", ko_required_argument, 310 },
{ "high-het", ko_no_argument, 311 },
{ "pb-range", ko_required_argument, 312 },
{ "lowQ", ko_required_argument, 312 },
{ 0, 0, 0 }
};
@@ -60,7 +60,7 @@ void Print_H(hifiasm_opt_t* asm_opt)
fprintf(stderr, " -x FLOAT max overlap drop ratio [%.2g]\n", asm_opt->max_drop_rate);
fprintf(stderr, " -y FLOAT min overlap drop ratio [%.2g]\n", asm_opt->min_drop_rate);
fprintf(stderr, " -u disable post join contigs step which may improve N50\n");
fprintf(stderr, " --pb-range INT\n");
fprintf(stderr, " --lowQ INT\n");
fprintf(stderr, " output contig regions with >=INT%% inconsistency in BED format; 0 to disable [%d]\n", asm_opt->bed_inconsist_rate);
// fprintf(stderr, " --pri-range INT1[,INT2]\n");
// fprintf(stderr, " keep contigs with coverage in this range in p_ctg.gfa; -1 to disable [auto,inf]\n");
@@ -133,7 +133,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->recover_atg_cov_min = -1024;
asm_opt->recover_atg_cov_max = INT_MAX;
asm_opt->hom_global_coverage = -1;
asm_opt->bed_inconsist_rate = 0;
asm_opt->bed_inconsist_rate = 70;
}
void destory_opt(hifiasm_opt_t* asm_opt)