diff --git a/CommandLines.h b/CommandLines.h index b61d863..c09d445 100644 --- a/CommandLines.h +++ b/CommandLines.h @@ -3,7 +3,7 @@ #include -#define HA_VERSION "0.3.0-dirty-r235" +#define HA_VERSION "0.3.0-dirty-r237" #define VERBOSE 0 diff --git a/Hash_Table.cpp b/Hash_Table.cpp index c156f9d..bc23fb5 100644 --- a/Hash_Table.cpp +++ b/Hash_Table.cpp @@ -371,6 +371,7 @@ int32_t ha_chain_lis_core(k_mer_hit *a, int32_t n_a, Chain_Data *dp, int32_t min b[i] = i; m = n_a; } else m = ha_kmer_hit_lis(n_a, a, b, M); + if (m < n_a>>1) return -1; bw_pen = 1.0 / bw_thres; dp->score[0] = a[b[0]].good? min_sc : min_sc>>1; dp->pre[0] = -1, dp->indels[0] = 0, dp->self_length[0] = 0;