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prt_dbg_gfa -> before transitive reduction

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chhylp123
2023-02-17 11:00:15 -05:00
parent fc598d71f6
commit b55e4396d2
4 changed files with 204 additions and 78 deletions
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gfa_ut.cpp
-8
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@@ -2568,13 +2568,6 @@ void post_rescue(ug_opt_t *uopt, asg_t *sg, ma_hit_t_alloc *src, ma_hit_t_alloc
uopt->min_ovlp, 10, uopt->gap_fuzz, b_mask_t, no_trio_recover);
}
void prt_dbg_gfa(ug_opt_t *uopt, asg_t *sg, char *o_file, const char *suffix)
{
char* gfa_name; MALLOC(gfa_name, strlen(o_file)+strlen(suffix)+50); sprintf(gfa_name, "%s.%s", o_file, suffix);
print_debug_gfa(sg, NULL, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1);
free(gfa_name);
}
void ul_clean_gfa(ug_opt_t *uopt, asg_t *sg, ma_hit_t_alloc *src, ma_hit_t_alloc *rev, R_to_U* rI, int64_t clean_round, double min_ovlp_drop_ratio, double max_ovlp_drop_ratio,
double ou_drop_rate, int64_t max_tip, int64_t gap_fuzz, bub_label_t *b_mask_t, int32_t is_ou, int32_t is_trio, uint32_t ou_thres, char *o_file)
{
@@ -2592,7 +2585,6 @@ double ou_drop_rate, int64_t max_tip, int64_t gap_fuzz, bub_label_t *b_mask_t, i
// exit(1);
// print_raw_u2rgfa_seq(&UL_INF, rI, 1);
// exit(1);
if(asm_opt.prt_dbg_gfa) prt_dbg_gfa(uopt, sg, o_file, "raw");
// fprintf(stderr, "%.*s\tid::%u\tis_c::%u\n",
// (int)Get_NAME_LENGTH(R_INF, 10785), Get_NAME(R_INF, 10785), 10785, is_contain_r((*rI), 10785));
// fprintf(stderr, "%.*s\tid::%u\tis_c::%u\n",