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2019_9_5

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This commit is contained in:
Haoyu Cheng
2019-09-05 11:47:54 -04:00
parent d5327fe9ee
commit b57923d050
6 changed files with 876 additions and 137 deletions
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Process_Read.cpp
+14 -12
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@@ -209,15 +209,16 @@ int load_All_reads(All_reads* r, char* read_file_name)
r->cigars = (Compressed_Cigar_record*)malloc(sizeof(Compressed_Cigar_record)*r->total_reads);
r->second_round_cigar = (Compressed_Cigar_record*)malloc(sizeof(Compressed_Cigar_record)*r->total_reads);
for (i = 0; i < r->total_reads; i++)
{
r->cigars[i].size = 0;
r->cigars[i].length = 0;
r->cigars[i].record = NULL;
r->second_round_cigar[i].size = r->cigars[i].size = 0;
r->second_round_cigar[i].length = r->cigars[i].length = 0;
r->second_round_cigar[i].record = r->cigars[i].record = NULL;
r->cigars[i].lost_base_size = 0;
r->cigars[i].lost_base_length = 0;
r->cigars[i].lost_base = NULL;
r->second_round_cigar[i].lost_base_size = r->cigars[i].lost_base_size = 0;
r->second_round_cigar[i].lost_base_length = r->cigars[i].lost_base_length = 0;
r->second_round_cigar[i].lost_base = r->cigars[i].lost_base = NULL;
}
@@ -277,15 +278,16 @@ void malloc_All_reads(All_reads* r)
}
r->cigars = (Compressed_Cigar_record*)malloc(sizeof(Compressed_Cigar_record)*r->total_reads);
r->second_round_cigar = (Compressed_Cigar_record*)malloc(sizeof(Compressed_Cigar_record)*r->total_reads);
for (i = 0; i < r->total_reads; i++)
{
r->cigars[i].size = 0;
r->cigars[i].length = 0;
r->cigars[i].record = NULL;
r->second_round_cigar[i].size = r->cigars[i].size = 0;
r->second_round_cigar[i].length = r->cigars[i].length = 0;
r->second_round_cigar[i].record = r->cigars[i].record = NULL;
r->cigars[i].lost_base_size = 0;
r->cigars[i].lost_base_length = 0;
r->cigars[i].lost_base = NULL;
r->second_round_cigar[i].lost_base_size = r->cigars[i].lost_base_size = 0;
r->second_round_cigar[i].lost_base_length = r->cigars[i].lost_base_length = 0;
r->second_round_cigar[i].lost_base = r->cigars[i].lost_base = NULL;
}