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better read phasing

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chhylp123
2021-12-07 22:47:52 -05:00
parent 1e2a9518e5
commit b640289b19
7 changed files with 552 additions and 197 deletions
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4
Assembly.cpp
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@@ -535,7 +535,7 @@ int64_t ha_ovec_mem(const ha_ovec_buf_t *b)
mem += sizeof(Cigar_record) + b->cigar1.lost_base_size + b->cigar1.size * 4;
mem += sizeof(Correct_dumy) + b->correct.size * 8;
mem += sizeof(Round2_alignment) + b->round2.cigar.size * 4 + b->round2.tmp_cigar.size * 4;
mem += sizeof(haplotype_evdience_alloc) + b->hap.size * sizeof(haplotype_evdience) + b->hap.snp_matrix_size + b->hap.snp_stat_size * sizeof(SnpStats);
mem += sizeof(haplotype_evdience_alloc) + b->hap.size * sizeof(haplotype_evdience) + b->hap.snp_matrix_size + b->hap.r_snp_size + b->hap.snp_stat.m * sizeof(SnpStats) + b->hap.snp_srt.m * sizeof(uint64_t);
mem += ha_Graph_mem(&b->POA_Graph);
mem += ha_Graph_mem(&b->DAGCon);
}
@@ -865,7 +865,7 @@ void ha_overlap_and_correct(int round)
if (asm_opt.required_read_name)
kt_for(asm_opt.thread_num, worker_ovec_related_reads, b, R_INF.total_reads);
else
kt_for(asm_opt.thread_num, worker_ovec, b, R_INF.total_reads);
kt_for(asm_opt.thread_num, worker_ovec, b, R_INF.total_reads);///debug_for_fix
if (r_out) write_pt_index(ha_flt_tab, ha_idx, &R_INF, &asm_opt, asm_opt.output_file_name);
ha_pt_destroy(ha_idx);