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r176: enabled the minimap2 chaining heuristic

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Heng Li
2020-04-01 22:06:14 -04:00
parent e75b93ae12
commit b7e5d1c4d3
5 changed files with 44 additions and 65 deletions
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Hash_Table.h
+9 -10
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@@ -113,8 +113,7 @@ typedef struct
overlap_region* list;
uint64_t size;
uint64_t length;
///uint64_t mapped_overlaps_length;
long long mapped_overlaps_length;
int64_t mapped_overlaps_length;
} overlap_region_alloc;
typedef struct
@@ -123,14 +122,14 @@ typedef struct
uint32_t offset, self_offset;
} k_mer_hit;
typedef struct
{
long long* score;
long long* pre;
long long* indels;
long long* self_length;
long long length;
long long size;
typedef struct {
int32_t *score;
int64_t *pre;
int32_t *indels;
int32_t *self_length;
int64_t *tmp;
int64_t length;
int64_t size;
} Chain_Data;
typedef struct