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phasing speedup

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chhylp123
2026-04-11 22:33:18 -04:00
parent 815d709fb9
commit ba8627fb23
13 changed files with 1055 additions and 186 deletions
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CommandLines.cpp
+6 -1
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@@ -93,6 +93,7 @@ static ko_longopt_t long_options[] = {
{ "ec-only", ko_no_argument, 375},
{ "hyb-syn", ko_required_argument, 376},
{ "simd-m", ko_required_argument, 377},
{ "del-hf", ko_no_argument, 378},
// { "path-round", ko_required_argument, 348},
{ 0, 0, 0 }
};
@@ -438,9 +439,11 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->hyb_syn = 1;
asm_opt->step_rd = -1/**128**/;
asm_opt->dbg_bam = 0/**1**/;
asm_opt->dbg_bam = 0;
asm_opt->simd_mm = -1;
asm_opt->del_hf = 0;
}
void destory_enzyme(enzyme* f)
@@ -1116,6 +1119,8 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
asm_opt->hyb_syn = atoi(opt.arg);
} else if (c == 377) {
asm_opt->simd_mm = atoi(opt.arg);
} else if (c == 378) {
asm_opt->del_hf = 1;
} else if (c == 'l') { ///0: disable purge_dup; 1: purge containment; 2: purge overlap
asm_opt->purge_level_primary = asm_opt->purge_level_trio = atoi(opt.arg);
}