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phasing speedup

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chhylp123
2026-04-11 22:33:18 -04:00
parent 815d709fb9
commit ba8627fb23
13 changed files with 1055 additions and 186 deletions
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Process_Read.h
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@@ -268,6 +268,7 @@ int64_t load_compress_base_disk(FILE *fp, uint64_t *ul_rid, char *dest, uint32_t
scaf_res_t *init_scaf_res_t(uint32_t n);
void destroy_scaf_res_t(scaf_res_t *p);
void read_ma(ma_hit_t* x, FILE* fp);
void retrieve_u_seq_fast(UC_Read* i_r, char* i_s, ma_utg_t *u, uint8_t strand, int64_t s, int64_t l, void *km);
const uint64_t sc_tb[8] = {
10, 20, 30, 40, 50, 60, 70, 80