xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-08 02:08:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

lack final alignment

Browse Source
This commit is contained in:
chhylp123
2022-10-01 19:53:02 -04:00
parent 20a7dac82a
commit bbd3394b4a
10 changed files with 1397 additions and 165 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Hash_Table.h
+6 -1
View File
@@ -208,5 +208,10 @@ int append_utg_inexact_overlap_region_alloc(overlap_region_alloc* list, overlap_
#define is_pri_aln(a) ((((a).readID) == ((uint32_t)(0x7fffffff)))||((a).cnt >= (a).readID))
uint64_t lchain_dp_trace(k_mer_hit* a, int64_t a_n, int64_t max_lgap, double sgap_rate, int64_t sgap);
uint64_t lchain_qdp(k_mer_hit* a, int64_t a_n, k_mer_hit* des, Chain_Data* dp, overlap_region* res,
int64_t max_skip, int64_t max_iter, int64_t max_dis, double chn_pen_gap, double chn_pen_skip, double bw_rate,
int64_t xl, int64_t yl, int64_t quick_check);
int ovlp_chain_qgen(overlap_region_alloc* ol, overlap_region* t, int64_t xl, int64_t yl, int64_t apend_be, k_mer_hit* hit, int64_t n_hit);
uint64_t lchain_refine(k_mer_hit* a, int64_t a_n, k_mer_hit* des, Chain_Data* dp,
int64_t max_skip, int64_t max_iter, int64_t max_dis, int64_t long_gap);
#endif