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chhylp123
2020-07-12 16:03:01 -04:00
parent a25c37ed89
commit c01b593d7c
7 changed files with 522 additions and 38 deletions
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Purge_Dups.h
+5 -1
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@@ -7,6 +7,10 @@
#include "Overlaps.h"
#include "Hash_Table.h"
#define COV_COUNT 1024
#define HOM_PEAK_RATE 1.25
#define HET_PEAK_RATE (HOM_PEAK_RATE*2)
#define ALTER_COV_THRES 0.9
#define REAL_ALTER_THRES 0.1
void purge_dups(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut, ma_hit_t_alloc* sources,
ma_hit_t_alloc* reverse_sources, R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, float density,
@@ -14,7 +18,7 @@ uint32_t purege_minLen, int max_hang, int min_ovlp, long long bubble_dist, float
uint32_t just_contain);
void fill_unitig(uint64_t* buffer, uint32_t bufferLen, asg_t* read_g, kvec_asg_arc_t_warp* edge,
uint32_t is_circle, uint64_t* rLen);
void get_contig_length(ma_ug_t *ug, asg_t *g, uint64_t* primaryLen, uint64_t* alterLen);
void enable_debug_mode(uint32_t mode);
#endif