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r211: added --write-paf/--write-ec/--skip-triobin

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Heng Li
2020-04-08 22:32:54 -04:00
parent 23dbfdef77
commit c41aae0630
8 changed files with 32 additions and 24 deletions
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Overlaps.cpp
+2 -2
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@@ -26466,7 +26466,7 @@ ma_sub_t **coverage_cut_ptr, int debug_g)
asg_arc_del_simple_circle_untig(sources, coverage_cut, sg, 100, 0);
if (asm_opt.verbose_gfa)
if (asm_opt.flag & HA_F_VERBOSE_GFA)
{
/*******************************for debug***************************************/
write_debug_graph(sg, sources, coverage_cut, output_file_name, n_read, reverse_sources, ruIndex);
@@ -26545,7 +26545,7 @@ long long bubble_dist, int read_graph, int write)
///actually min_thres = asm_opt.max_short_tip + 1 there are asm_opt.max_short_tip reads
min_thres = asm_opt.max_short_tip + 1;
if (asm_opt.verbose_gfa)
if (asm_opt.flag & HA_F_VERBOSE_GFA)
{
if(load_debug_graph(&sg, &sources, &coverage_cut, output_file_name, &reverse_sources, &ruIndex))
{