xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-26 08:18:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r211: added --write-paf/--write-ec/--skip-triobin

Browse Source
This commit is contained in:
Heng Li
2020-04-08 22:32:54 -04:00
parent 23dbfdef77
commit c41aae0630
8 changed files with 32 additions and 24 deletions
Download Patch File Download Diff File Expand all files Collapse all files
anchor.cpp
+1 -1
View File
@@ -62,7 +62,7 @@ void ha_get_new_candidates(ha_abuf_t *ab, int64_t rid, UC_Read *ucr, overlap_reg
ab->mz.n = 0, ab->n_a = 0;
// get the list of anchors
ha_sketch(ucr->seq, ucr->length, asm_opt.mz_win, asm_opt.k_mer_length, 0, !asm_opt.no_HPC, &ab->mz, ha_flt_tab);
ha_sketch(ucr->seq, ucr->length, asm_opt.mz_win, asm_opt.k_mer_length, 0, !(asm_opt.flag & HA_F_NO_HPC), &ab->mz, ha_flt_tab);
if (ab->mz.m > ab->old_mz_m) {
ab->old_mz_m = ab->mz.m;
REALLOC(ab->seed, ab->old_mz_m);