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r211: added --write-paf/--write-ec/--skip-triobin

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Heng Li
2020-04-08 22:32:54 -04:00
parent 23dbfdef77
commit c41aae0630
8 changed files with 32 additions and 24 deletions
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htab.cpp
+1 -1
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@@ -721,7 +721,7 @@ ha_ct_t *ha_count(const hifiasm_opt_t *asm_opt, int flag, ha_pt_t *p0, const voi
}
yak_copt_init(&opt);
opt.k = asm_opt->k_mer_length;
opt.is_HPC = !asm_opt->no_HPC;
opt.is_HPC = !(asm_opt->flag&HA_F_NO_HPC);
opt.w = flag & HAF_COUNT_ALL? 1 : asm_opt->mz_win;
opt.bf_shift = flag & HAF_COUNT_EXACT? 0 : asm_opt->bf_shift;
opt.n_thread = asm_opt->thread_num;