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https://github.com/chhylp123/hifiasm.git
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for hifiasm 3.0
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+7
-1
@@ -106,7 +106,12 @@ typedef struct
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uint32_t new_length;
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}Compressed_Cigar_record;
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#define AMBIGU 0
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#define FATHER 1
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#define MOTHER 2
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#define MIX_TRIO 3
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#define NON_TRIO 4
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#define DROP 5
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typedef struct
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{
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uint64_t** N_site;
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@@ -117,6 +122,7 @@ typedef struct
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uint8_t** read_sperate;
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uint64_t* read_length;
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uint64_t* read_size;
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uint8_t* trio_flag;
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///seq start pos in uint8_t* read
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///do not need it
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