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checkpoint for scaffolding

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chhylp123
2023-09-15 12:58:34 -04:00
parent 858b95a3bb
commit c7685e6f19
8 changed files with 1735 additions and 98 deletions
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hic.cpp
+2 -2
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@@ -6934,7 +6934,7 @@ void get_bub_id(bubble_type* bub, uint32_t root, uint64_t* id0, uint64_t* id1, u
if(check_het)
{
get_bubbles(bub, b_id0, &beg, &sink, NULL, NULL, NULL);
if(IF_HET(beg>>1, *bub) && IF_HET(sink>>1, *bub)) b_id0 = (uint64_t)-1;
if(((beg == (uint32_t)-1) || IF_HET(beg>>1, *bub)) && ((sink == (uint32_t)-1) || IF_HET(sink>>1, *bub))) b_id0 = (uint64_t)-1;
}
}
@@ -6944,7 +6944,7 @@ void get_bub_id(bubble_type* bub, uint32_t root, uint64_t* id0, uint64_t* id1, u
if(check_het)
{
get_bubbles(bub, b_id1, &beg, &sink, NULL, NULL, NULL);
if(IF_HET(beg>>1, *bub) && IF_HET(sink>>1, *bub)) b_id1 = (uint64_t)-1;
if(((beg == (uint32_t)-1) || IF_HET(beg>>1, *bub)) && ((sink == (uint32_t)-1) || IF_HET(sink>>1, *bub))) b_id1 = (uint64_t)-1;
}
}