xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-30 21:28:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

unclean graph

Browse Source
This commit is contained in:
Haoyu Cheng
2019-11-22 21:58:56 -05:00
parent 2a8e0dc254
commit cb26e0ecd4
1 changed files with 9 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
+9 -2
View File
@@ -7825,7 +7825,7 @@ static uint64_t asg_bub_pop1(asg_t *g, uint32_t v0, int max_dist, buf_t *b)
} while (b->S.n > 1 || n_pending);
asg_bub_backtrack(g, v0, b);
n_pop = 1 | (uint64_t)b->T.n<<32;
fprintf(stderr, "v>>1: %u\n", v0>>1);
///fprintf(stderr, "v>>1: %u\n", v0>>1);
pop_reset:
for (i = 0; i < b->b.n; ++i) { // clear the states of visited vertices
binfo_t *t = &b->a[b->b.a[i]];
@@ -8181,6 +8181,11 @@ char* output_file_name, long long bubble_dist, int read_graph, int write)
// debug_info_of_specfic_node("m64016_190918_162737/72220752/ccs", sg, "del_trans");
char* unlean_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(unlean_name, "%s.unclean", output_file_name);
output_read_graph(sg, coverage_cut, unlean_name, n_read);
free(unlean_name);
asg_cut_tip(sg, MAX_SHORT_TIPS);
@@ -8276,8 +8281,10 @@ char* output_file_name, long long bubble_dist, int read_graph, int write)
asg_cut_tip(sg, MAX_SHORT_TIPS);
/****************************may have bugs********************************/
asg_arc_del_non_different_haps(sg, reverse_sources, drop_ratio);
asg_cut_tip(sg, MAX_SHORT_TIPS);
//asg_arc_identify_simple_bubbles(sg);
asg_arc_identify_simple_bubbles_multi(sg, 1);
@@ -8341,7 +8348,7 @@ char* output_file_name, long long bubble_dist, int read_graph, int write)
asg_arc_identify_simple_bubbles_multi(sg, 0);
asg_arc_del_too_short_overlaps(sg, 2000, min_ovlp_drop_ratio, reverse_sources);
asg_cut_tip(sg, MAX_SHORT_TIPS);