From cd2300907ab57573dbd96323ddeba9062b30a125 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Thu, 26 Dec 2019 15:32:11 -0500 Subject: [PATCH] README --- README.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 9786856..2ffa7c9 100644 --- a/README.md +++ b/README.md @@ -13,7 +13,9 @@ Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hif Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets: -|Dataset |GSize |Cov |Asm options |CPU time |Wall time | RAM| -|:-----------------------|-----:|-------:|:------------------|--------:|---------:|-------:| -|[Human NA12878] |3Gb |x28 |-k 40 -t 42 -r 2 | 200h| 5h32m| ?114.1G| -|[Human HG002] |3Gb |x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m| ?122.1G| +|Dataset |GSize |Cov |Asm options |CPU time |Wall time | RAM| +|:-----------------------|-----:|-------:|:---------------------|--------:|---------:|-------:| +|[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m| ?114.1G| +|[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m| ?122.1G| +|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| +|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16.7G|