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new gchain

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chhylp123
2022-03-16 01:13:27 -04:00
parent 9c6a3607d1
commit d3b9de4120
8 changed files with 1771 additions and 117 deletions
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Makefile
+3 -2
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@@ -7,7 +7,7 @@ INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o horder.o \
tovlp.o inter.o kalloc.o
tovlp.o inter.o kalloc.o gfa_ut.o
EXE= hifiasm
LIBS= -lz -lpthread -lm
@@ -77,4 +77,5 @@ rcut.o: rcut.h
horder.o: horder.h
tovlp.o: tovlp.h
inter.o: inter.h Process_Read.h
kalloc.o: kalloc.h
kalloc.o: kalloc.h
gfa_ut.o: Overlaps.h