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r183: reorganized the major workflow

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This commit is contained in:
Heng Li
2020-04-03 13:34:07 -04:00
parent ffba3ce0ef
commit d529dcea3f
5 changed files with 75 additions and 151 deletions
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12
main.cpp
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@@ -8,20 +8,16 @@
int main(int argc, char *argv[])
{
int i;
int i, ret;
yak_reset_realtime();
init_opt(&asm_opt);
if (!CommandLine_process(argc, argv, &asm_opt)) return 1;
yak_reset_realtime();
if (!asm_opt.no_kmer_flt)
ha_flt_tab = ha_ft_gen(&asm_opt, &R_INF);
Correct_Reads(asm_opt.number_of_round);
ha_ft_destroy(ha_flt_tab);
destory_All_reads(&R_INF);
ret = ha_assemble();
destory_opt(&asm_opt);
fprintf(stderr, "[M::%s] Version: %s\n", __func__, HA_VERSION);
fprintf(stderr, "[M::%s] CMD:", __func__);
for (i = 0; i < argc; ++i)
fprintf(stderr, " %s", argv[i]);
fprintf(stderr, "\n[M::%s] Real time: %.3f sec; CPU: %.3f sec; Peak RSS: %.3f GB\n", __func__, yak_realtime(), yak_cputime(), yak_peakrss() / 1024.0 / 1024.0 / 1024.0);
return 0;
return ret;
}