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phasing

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This commit is contained in:
Haoyu Cheng
2019-09-02 10:30:14 -04:00
parent 3c0c201cdf
commit d5327fe9ee
15 changed files with 3396 additions and 656 deletions
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Assembly.h
+4 -1
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@@ -4,12 +4,15 @@
#define FORWARD 0
#define REVERSE_COMPLEMENT (0x8000000000000000)
#define Get_Cigar_Type(RECORD) (RECORD&3)
#define Get_Cigar_Length(RECORD) (RECORD>>2)
void Counting_multiple_thr();
void Build_hash_table_multiple_thr();
int load_pre_cauculated_index();
void Overlap_calculate_multipe_thr();
void Correct_Reads(int last_round);
/********************************for debug***************************************/
void Verify_Counting();