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phasing

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This commit is contained in:
Haoyu Cheng
2019-09-02 10:30:14 -04:00
parent 3c0c201cdf
commit d5327fe9ee
15 changed files with 3396 additions and 656 deletions
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main.cpp
+2 -19
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@@ -206,6 +206,7 @@ int main(int argc, char *argv[])
return 1;
**/
fprintf(stdout, "Will perform %d round of error correction...\n", number_of_round);
fprintf(stdout, "defined k_mer_min_freq by user: %d\n", k_mer_min_freq);
fprintf(stdout, "defined k_mer_max_freq by user: %d\n", k_mer_max_freq);
@@ -213,25 +214,7 @@ int main(int argc, char *argv[])
fprintf(stdout, "k-mer length: %d\n",k_mer_length);
if (load_index_from_disk && load_pre_cauculated_index())
{
;
}
else
{
Counting_multiple_thr();
Build_hash_table_multiple_thr();
}
fprintf(stdout, "k_mer_min_freq in hashtable: %d\n", k_mer_min_freq);
fprintf(stdout, "k_mer_max_freq in hashtable: %d\n", k_mer_max_freq);
///verify_Position_hash_table();
Overlap_calculate_multipe_thr();
Correct_Reads(number_of_round);